halophFGD

Basic Information

Locus ID: Oco10G016290

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Short Name: UBC25

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG10	21352045	21356858	-	Oco10G016290

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.05	56,369.60 Da	40.60	72.63	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	243	369	2.8601E-38	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	244	375	1.1E-24	IPR000608
SUPERFAMILY	SSF54495	UBC-like	235	409	1.97E-43	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	200	480	7.4E-91	IPR016135
SMART	SM00212	ubc_7	243	400	8.8E-23	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	240	400	35.263714	IPR000608

KEGG Pathway

KO Term:

K10581 (ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15355.1	ubiquitin-conjugating enzyme 25.
RefSeq	XP_052156486.1	uncharacterized protein LOC127774293 [Oryza glaberrima]
Swiss-Prot	Q9LUQ5	Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1
TrEMBL	A0A0E0L5L5	UBC core domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19470, jg24454, jg26130, jg5630, jg5633
Aizoaceae	Mesembryanthemum crystallinum	5	gene_15657, gene_21052, gene_2930, gene_2931, gene_7448
Amaranthaceae	Atriplex hortensis	3	Ah008153, Ah012098, Ah019245
Amaranthaceae	Beta vulgaris	4	BVRB_3g054350, BVRB_4g086990, BVRB_4g087020, BVRB_9g204860
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg11787, Sbi_jg11788, Sbi_jg18663, Sbi_jg37101 ... Sbi_jg38066, Sbi_jg38067, Sbi_jg46617, Sbi_jg47225, Sbi_jg6198
Amaranthaceae	Salicornia europaea	3	Seu_jg15645, Seu_jg21020, Seu_jg4918
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00006246, GOSA_00006871, GOSA_00006873, GOSA_00016807
Amaranthaceae	Suaeda glauca	9	Sgl00686, Sgl00803, Sgl05702, Sgl23162, Sgl23163, Sgl28256 ... Sgl28257, Sgl80041, Sgl82474
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000011786, gene:ENSEOMG00000015160 ... gene:ENSEOMG00000028661, gene:ENSEOMG00000030227, gene:ENSEOMG00000037779, gene:ENSEOMG00000041150, gene:ENSEOMG00000042145, gene:ENSEOMG00000049431
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0002840, CQ.Regalona.r1.3AG0000360 ... CQ.Regalona.r1.3BG0000290, CQ.Regalona.r1.4AG0019830, CQ.Regalona.r1.4BG0020120, CQ.Regalona.r1.9AG0007290, CQ.Regalona.r1.9BG0014620
Anacardiaceae	Pistacia vera	2	pistato.v30019850, pistato.v30161090
Apiaceae	Apium graveolens	7	Ag11G03142, Ag11G03391, Ag2G00249, Ag3G00292, Ag4G02056 ... Ag7G01733, Ag8G01792
Arecaceae	Cocos nucifera	3	COCNU_02G003940, COCNU_03G011660, scaffold020239G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103702531, gene-LOC103718674
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1346.V1.1, AsparagusV1_01.1347.V1.1 ... AsparagusV1_01.467.V1.1, AsparagusV1_06.1714.V1.1, AsparagusV1_09.807.V1.1
Asteraceae	Flaveria trinervia	5	Ftri14G10070, Ftri4G25074, Ftri5G10446, Ftri7G03049 ... Ftri8G31022
Brassicaceae	Arabidopsis thaliana	3	AT1G53023.1, AT1G53025.1, AT3G15355.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011411m.g.v1.0, Thhalv10020387m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g39580.v2.2, Sp3g13590.v2.2
Brassicaceae	Brassica nigra	13	BniB01g023290.2N, BniB01g026020.2N, BniB01g049620.2N ... BniB03g058660.2N, BniB03g061810.2N, BniB04g056370.2N, BniB06g023020.2N, BniB06g027800.2N, BniB06g027820.2N, BniB06g027860.2N, BniB07g003160.2N, BniB07g028220.2N, BniB07g054320.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1031, Ceq02G2623, Ceq09G1030
Casuarinaceae	Casuarina glauca	4	Cgl01G1143, Cgl01G1202, Cgl02G2716, Cgl09G1119
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g16680
Dunaliellaceae	Dunaliella salina	3	Dusal.0029s00009.v1.0, Dusal.0130s00023.v1.0 ... Dusal.0357s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g17910, gene.Thate09g07670
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-9199, nbisL1-mrna-9384
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1841, evm.TU.LG05.1610
Plantaginaceae	Plantago ovata	6	Pov_00004531, Pov_00012982, Pov_00026266, Pov_00026269 ... Pov_00026270, Pov_00038713
Plumbaginaceae	Limonium bicolor	5	Lb1G06674, Lb1G06675, Lb4G26106, Lb6G32269, Lb7G33177
Poaceae	Echinochloa crus-galli	13	AH02.2737, AH02.68, AH02.76, AH05.574, BH02.58, BH02.65 ... BH05.617, CH02.3722, CH02.68, CH05.3666, CH05.3735, CH05.4056, CH05.715
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0000580, gene-QOZ80_1AG0000670 ... gene-QOZ80_1AG0028480, gene-QOZ80_1BG0049020, gene-QOZ80_1BG0049080, gene-QOZ80_1BG0078670, gene-QOZ80_5AG0363680, gene-QOZ80_5AG0400920, gene-QOZ80_5AG0401190, gene-QOZ80_5BG0411800, gene-QOZ80_5BG0449480, gene-QOZ80_5BG0449750, gene-QOZ80_5BG0452540
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0031770.1, HORVU.MOREX.r3.1HG0086000.1 ... HORVU.MOREX.r3.1HG0091180.1, HORVU.MOREX.r3.3HG0223700.1, HORVU.MOREX.r3.3HG0249250.1, HORVU.MOREX.r3.3HG0249450.1, HORVU.MOREX.r3.3HG0249480.1, HORVU.MOREX.r3.3HG0279940.1
Poaceae	Lolium multiflorum	9	gene-QYE76_010470, gene-QYE76_014679, gene-QYE76_015748 ... gene-QYE76_047087, gene-QYE76_051592, gene-QYE76_051599, gene-QYE76_051603, gene-QYE76_051608, gene-QYE76_054554
Poaceae	Oryza coarctata	8	Oco01G005920, Oco01G006000, Oco02G006000, Oco02G006070 ... Oco09G005060, Oco09G016460, Oco10G004950, Oco10G016290
Poaceae	Oryza sativa	8	LOC_Os01g12950.2, LOC_Os01g13170.1, LOC_Os01g13280.1 ... LOC_Os01g48580.1, LOC_Os03g47580.1, LOC_Os05g14300.1, LOC_Os05g48380.1, LOC_Os09g12310.1
Poaceae	Paspalum vaginatum	6	gene-BS78_03G004500, gene-BS78_03G005200, gene-BS78_K190700 ... gene-BS78_03G230300, gene-BS78_09G111000, gene-BS78_09G231300
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0204844, Pt_Chr0204851, Pt_Chr0300106, Pt_Chr0300128 ... Pt_Chr0501448, Pt_Chr0505734, Pt_Chr0505742, Pt_Chr0602341
Poaceae	Sporobolus alterniflorus	17	Chr01G010930, Chr02G012780, Chr03G000650, Chr05G020890 ... Chr06G020550, Chr08G004800, Chr12G025980, Chr14G017420, Chr14G017440, Chr14G017480, Chr18G004940, Chr19G007160, Chr21G016290, Chr21G016310, Chr21G016320, Chr22G001610, Chr22G012340
Poaceae	Thinopyrum elongatum	12	Tel1E01G234600, Tel1E01G634200, Tel2E01G122400 ... Tel2E01G971500, Tel3E01G052100, Tel3E01G280800, Tel3E01G281700, Tel3E01G281900, Tel3E01G446000, Tel4E01G487100, Tel4E01G487400, Tel5E01G424700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG019850, gene_TRIDC1AG057040 ... gene_TRIDC1BG022550, gene_TRIDC1BG065600, gene_TRIDC3AG021240, gene_TRIDC3AG021380, gene_TRIDC3AG040110, gene_TRIDC3BG025480, gene_TRIDC3BG025600, gene_TRIDC3BG045320, gene_TRIDC5AG019620, gene_TRIDC5BG043720
Poaceae	Triticum aestivum	27	TraesCS1A02G129500.2, TraesCS1A02G388000.1 ... TraesCS1B02G146400.2, TraesCS1B02G415500.2, TraesCS1D02G125200.2, TraesCS1D02G396000.2, TraesCS2A02G441700.1, TraesCS3A02G030200.1.cds1, TraesCS3A02G156300.1, TraesCS3A02G157200.1, TraesCS3A02G157300.2, TraesCS3A02G269200.1, TraesCS3B02G029300.1.cds1, TraesCS3B02G183000.1, TraesCS3B02G183600.1, TraesCS3B02G183800.2, TraesCS3B02G303300.1, TraesCS3D02G164200.1, TraesCS3D02G164800.2, TraesCS3D02G164900.3, TraesCS3D02G269000.1, TraesCS4D02G289700.1.cds1, TraesCS5B02G264000.1, TraesCS5D02G272300.1, TraesCS5D02G272400.1, TraesCS7B02G110500.1.cds1, TraesCS7D02G206600.1
Poaceae	Zea mays	6	Zm00001eb119100_P001, Zm00001eb119150_P003 ... Zm00001eb295480_P003, Zm00001eb339310_P001, Zm00001eb343290_P002, Zm00001eb399020_P001
Poaceae	Zoysia japonica	6	nbis-gene-13706, nbis-gene-13707, nbis-gene-24259 ... nbis-gene-26081, nbis-gene-32728, nbis-gene-32732
Poaceae	Zoysia macrostachya	5	Zma_g10867, Zma_g27357, Zma_g7175, Zma_g7178, Zma_g9493
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.717, evm.TU.LG09.1888, evm.TU.LG18.447 ... evm.TU.LG26.591
Posidoniaceae	Posidonia oceanica	6	gene.Posoc08g10730, gene.Posoc08g10740, gene.Posoc09g03630 ... gene.Posoc09g05490, gene.Posoc09g05500, gene.Posoc09g05960
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_3_RagTag.661, evm.TU.Scaffold_3_RagTag.662 ... evm.TU.Scaffold_3_RagTag.663, evm.TU.Scaffold_5_RagTag.1358, evm.TU.Scaffold_9_RagTag.172
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-11868, nbisL1-mrna-1313, nbisL1-mrna-1314 ... nbisL1-mrna-1315, nbisL1-mrna-19278, nbisL1-mrna-21876
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10198, nbisL1-mrna-1814, nbisL1-mrna-18447 ... nbisL1-mrna-18448
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-11104, nbisL1-mrna-6346, nbisL1-mrna-6347 ... nbisL1-mrna-6348, nbisL1-mrna-7525, nbisL1-mrna-7526
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.339, add.evm.TU.utg000019l.340 ... evm.TU.utg000003l.116, evm.TU.utg000006l.794, evm.TU.utg000019l.818
Rhizophoraceae	Kandelia obovata	4	Maker00012584, Maker00012812, Maker00013924, Maker00017534
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10318, nbisL1-mrna-18836, nbisL1-mrna-22229 ... nbisL1-mrna-5282, nbisL1-mrna-6742
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21699, nbisL1-mrna-4047, nbisL1-mrna-7143
Salicaceae	Populus euphratica	7	populus_peu00519, populus_peu06883, populus_peu16820 ... populus_peu17582, populus_peu20799, populus_peu37387, populus_peu37497
Solanaceae	Lycium barbarum	4	gene-LOC132604489, gene-LOC132616651, gene-LOC132628806 ... gene-LOC132636477
Solanaceae	Solanum chilense	3	SOLCI000578000, SOLCI002996700, SOLCI003482400
Solanaceae	Solanum pennellii	3	gene-LOC107005689, gene-LOC107024308, gene-LOC107032300
Tamaricaceae	Reaumuria soongarica	4	STRG.3272_chr01_-, gene_10553, gene_14341, gene_4232
Tamaricaceae	Tamarix chinensis	4	TC01G2621, TC02G1560, TC07G0229, TC07G1292
Zosteraceae	Zostera marina	2	Zosma01g23440.v3.1, Zosma04g08520.v3.1