HalophFGD

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Basic Information
Locus ID: Oco10G016130
Species & Taxonomic ID: Oryza coarctata & 77588
Genome Assembly: GCA_030770085.1
Short Name: GLT1
Description: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
Maps and Mapping Data
Chromosome Start End Strand ID
LG10 21201178 21212775 + Oco10G016130
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.69 238,344.75 Da 34.32 83.11 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00713 GltS 99 521 0.0 -
CDD cd02808 GltS_FMN 931 1310 9.99665E-169 IPR002932
CDD cd00982 gltB_C 1358 1607 8.98881E-152 IPR002489
Pfam PF01493 GXGXG motif 1381 1567 3.9E-86 IPR002489
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1818 2143 2.1E-24 IPR023753
Pfam PF04898 Glutamate synthase central domain 574 861 3.6E-111 IPR006982
Pfam PF01645 Conserved region in glutamate synthase 931 1298 3.3E-149 IPR002932
Pfam PF00310 Glutamine amidotransferases class-II 99 526 4.5E-183 IPR017932
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1693 1805 9.4E-20 IPR028261
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 1815 2154 6.34E-59 IPR036188
SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 1350 1615 1.44E-98 IPR036485
SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 99 529 3.43E-148 IPR029055
SUPERFAMILY SSF46548 alpha-helical ferredoxin 1669 1828 4.87E-35 -
SUPERFAMILY SSF51395 FMN-linked oxidoreductases 570 1332 5.5E-249 -
Gene3D G3DSA:3.20.20.70 Aldolase class I 554 913 8.0E-131 IPR013785
Gene3D G3DSA:3.20.20.70 Aldolase class I 914 1344 6.8E-197 IPR013785
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 99 538 5.8E-195 IPR029055
Gene3D G3DSA:3.50.50.60 - 1927 2087 1.3E-31 IPR036188
Gene3D G3DSA:1.10.1060.10 - 1649 1817 6.1E-41 IPR009051
Gene3D G3DSA:3.40.50.720 - 1818 1926 1.1E-14 -
Gene3D G3DSA:2.160.20.60 - 1345 1612 1.4E-111 IPR036485
TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1671 2155 2.7E-221 IPR006005
PIRSF PIRSF000187 GOGAT 54 2180 0.0 IPR012220
ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 99 503 24.290089 IPR017932
PRINTS PR00419 Adrenodoxin reductase family signature 1885 1895 2.9E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1963 1977 2.9E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1819 1841 2.9E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1842 1855 2.9E-22 -
MobiDBLite mobidb-lite consensus disorder prediction 1 39 - -
Coils Coil Coil 1615 1635 - -
Gene Ontology
Biological Process:
GO:0006537 (glutamate biosynthetic process) GO:0008152 (metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0005506 (iron ion binding) GO:0010181 (FMN binding) GO:0015930 (glutamate synthase activity) GO:0016040 (glutamate synthase (NADH) activity) GO:0016491 (oxidoreductase activity) GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors) GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor) GO:0050660 (flavin adenine dinucleotide binding) GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
KO Term:
K00264 (glutamate synthase (NADH) [EC:1.4.1.14])
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00910 (Nitrogen metabolism) map00910 (Nitrogen metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Reaction:
R00093 (2 L-Glutamate + NAD+ <=> L-Glutamine + 2-Oxoglutarate + NADH + H+) R00114 (2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+) R00248 (L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G53460.1 NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase 0
RefSeq NP_001389554.1 glutamate synthase 2 [NADH], chloroplastic [Oryza sativa Japonica Group] 0
Swiss-Prot Q0DG35 Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0555600 PE=2 SV=2 0
TrEMBL A0A0E0L5I0 glutamate synthase (NADH) OS=Oryza punctata OX=4537 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg13893, jg2196
Aizoaceae Mesembryanthemum crystallinum 1 gene_3295
Amaranthaceae Atriplex hortensis 1 Ah018647
Amaranthaceae Beta vulgaris 1 BVRB_3g052140
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15107, Sbi_jg55939
Amaranthaceae Salicornia europaea 1 Seu_jg26420
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020044
Amaranthaceae Suaeda glauca 5 Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ...
gene:ENSEOMG00000043885
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920
Anacardiaceae Pistacia vera 1 pistato.v30185180
Apiaceae Apium graveolens 2 Ag10G02525, AgUnG00467
Arecaceae Cocos nucifera 2 COCNU_03G013130, scaffold000561G000020
Arecaceae Phoenix dactylifera 2 gene-LOC103708325, gene-LOC103713334
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.2833.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G12439
Brassicaceae Arabidopsis thaliana 1 AT5G53460.1
Brassicaceae Eutrema salsugineum 1 Thhalv10012414m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp6g15593.v2.2
Brassicaceae Brassica nigra 1 BniB08g016600.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G1606
Casuarinaceae Casuarina glauca 1 Cgl09G1742
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g12650, gene.Cymno12g01560
Dunaliellaceae Dunaliella salina 1 Dusal.0052s00003.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g24920, gene.Thate09g14990
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.2897
Plantaginaceae Plantago ovata 1 Pov_00041146
Plumbaginaceae Limonium bicolor 2 Lb0G37740, Lb7G32942
Poaceae Echinochloa crus-galli 5 AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ...
gene-QOZ80_5AG0363860, gene-QOZ80_5BG0411960
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0280530.1
Poaceae Lolium multiflorum 2 gene-QYE76_054594, gene-QYE76_054602
Poaceae Oryza coarctata 4 Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130
Poaceae Oryza sativa 2 LOC_Os01g48960.1, LOC_Os05g48200.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G233100, gene-BS78_03G236800 ...
gene-BS78_09G229900
Poaceae Puccinellia tenuiflora 1 Pt_Chr0602367
Poaceae Sporobolus alterniflorus 3 Chr02G012560, Chr03G013590, Chr08G013750
Poaceae Thinopyrum elongatum 1 Tel3E01G442300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG039670, gene_TRIDC3BG044820
Poaceae Triticum aestivum 3 TraesCS3A02G266300.1, TraesCS3B02G299800.1 ...
TraesCS3D02G266400.1
Poaceae Zea mays 3 Zm00001eb156610_P002, Zm00001eb295220_P001 ...
Zm00001eb360480_P005
Poaceae Zoysia japonica 2 nbis-gene-12580, nbis-gene-26118
Poaceae Zoysia macrostachya 2 Zma_g10886, Zma_g8437
Portulacaceae Portulaca oleracea 1 evm.TU.LG06.1967
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13790, gene.Posoc09g09130
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-3559, nbisL1-mrna-7507
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-2555, nbisL1-mrna-921
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14013, nbisL1-mrna-5641
Rhizophoraceae Kandelia candel 2 evm.TU.utg000009l.314, evm.TU.utg000012l.386
Rhizophoraceae Kandelia obovata 2 Maker00005974, Maker00011451
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-2744, nbisL1-mrna-8412
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-16769, nbisL1-mrna-743
Salicaceae Populus euphratica 3 populus_peu28067, populus_peu29502, populus_peu29503
Solanaceae Lycium barbarum 1 gene-LOC132632063
Solanaceae Solanum pennellii 1 gene-LOC107013700
Tamaricaceae Reaumuria soongarica 1 gene_5260
Tamaricaceae Tamarix chinensis 1 TC06G1506
Zosteraceae Zostera marina 2 Zosma01g06270.v3.1, Zosma01g22390.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.