Basic Information
Locus ID:
Oco10G016130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
GLT1
Description:
Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 21201178 | 21212775 | + | Oco10G016130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 238,344.75 Da | 34.32 | 83.11 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00713 | GltS | 99 | 521 | 0.0 | - |
| CDD | cd02808 | GltS_FMN | 931 | 1310 | 9.99665E-169 | IPR002932 |
| CDD | cd00982 | gltB_C | 1358 | 1607 | 8.98881E-152 | IPR002489 |
| Pfam | PF01493 | GXGXG motif | 1381 | 1567 | 3.9E-86 | IPR002489 |
| Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 1818 | 2143 | 2.1E-24 | IPR023753 |
| Pfam | PF04898 | Glutamate synthase central domain | 574 | 861 | 3.6E-111 | IPR006982 |
| Pfam | PF01645 | Conserved region in glutamate synthase | 931 | 1298 | 3.3E-149 | IPR002932 |
| Pfam | PF00310 | Glutamine amidotransferases class-II | 99 | 526 | 4.5E-183 | IPR017932 |
| Pfam | PF14691 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | 1693 | 1805 | 9.4E-20 | IPR028261 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 1815 | 2154 | 6.34E-59 | IPR036188 |
| SUPERFAMILY | SSF69336 | Alpha subunit of glutamate synthase, C-terminal domain | 1350 | 1615 | 1.44E-98 | IPR036485 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 99 | 529 | 3.43E-148 | IPR029055 |
| SUPERFAMILY | SSF46548 | alpha-helical ferredoxin | 1669 | 1828 | 4.87E-35 | - |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 570 | 1332 | 5.5E-249 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 554 | 913 | 8.0E-131 | IPR013785 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 914 | 1344 | 6.8E-197 | IPR013785 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 99 | 538 | 5.8E-195 | IPR029055 |
| Gene3D | G3DSA:3.50.50.60 | - | 1927 | 2087 | 1.3E-31 | IPR036188 |
| Gene3D | G3DSA:1.10.1060.10 | - | 1649 | 1817 | 6.1E-41 | IPR009051 |
| Gene3D | G3DSA:3.40.50.720 | - | 1818 | 1926 | 1.1E-14 | - |
| Gene3D | G3DSA:2.160.20.60 | - | 1345 | 1612 | 1.4E-111 | IPR036485 |
| TIGRFAM | TIGR01317 | GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit | 1671 | 2155 | 2.7E-221 | IPR006005 |
| PIRSF | PIRSF000187 | GOGAT | 54 | 2180 | 0.0 | IPR012220 |
| ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 99 | 503 | 24.290089 | IPR017932 |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1885 | 1895 | 2.9E-22 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1963 | 1977 | 2.9E-22 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1819 | 1841 | 2.9E-22 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1842 | 1855 | 2.9E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| Coils | Coil | Coil | 1615 | 1635 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
GO:0003824 (catalytic activity)
GO:0005506 (iron ion binding)
GO:0010181 (FMN binding)
GO:0015930 (glutamate synthase activity)
GO:0016040 (glutamate synthase (NADH) activity)
GO:0016491 (oxidoreductase activity)
GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors)
GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor)
GO:0050660 (flavin adenine dinucleotide binding)
GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00910 (Nitrogen metabolism)
map00910 (Nitrogen metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53460.1 | NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase | 0 |
| RefSeq | NP_001389554.1 | glutamate synthase 2 [NADH], chloroplastic [Oryza sativa Japonica Group] | 0 |
| Q0DG35 | Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0555600 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0L5I0 | glutamate synthase (NADH) OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13893, jg2196 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3295 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018647 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15107, Sbi_jg55939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26420 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020044 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30185180 |
| Apiaceae | Apium graveolens | 2 | Ag10G02525, AgUnG00467 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G013130, scaffold000561G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708325, gene-LOC103713334 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2833.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12439 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012414m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15593.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g016600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1606 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1742 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g12650, gene.Cymno12g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g24920, gene.Thate09g14990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041146 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37740, Lb7G32942 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0280530.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054594, gene-QYE76_054602 |
| Poaceae | Oryza coarctata | 4 | Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48960.1, LOC_Os05g48200.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G233100, gene-BS78_03G236800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602367 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G012560, Chr03G013590, Chr08G013750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G442300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG039670, gene_TRIDC3BG044820 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G266300.1, TraesCS3B02G299800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156610_P002, Zm00001eb295220_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12580, nbis-gene-26118 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10886, Zma_g8437 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1967 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13790, gene.Posoc09g09130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3559, nbisL1-mrna-7507 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2555, nbisL1-mrna-921 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14013, nbisL1-mrna-5641 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.314, evm.TU.utg000012l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005974, Maker00011451 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2744, nbisL1-mrna-8412 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16769, nbisL1-mrna-743 |
| Salicaceae | Populus euphratica | 3 | populus_peu28067, populus_peu29502, populus_peu29503 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632063 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013700 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5260 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1506 |
| Zosteraceae | Zostera marina | 2 | Zosma01g06270.v3.1, Zosma01g22390.v3.1 |