Basic Information
Locus ID:
Oco10G015860
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 20942315 | 20949846 | + | Oco10G015860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 139,872.86 Da | 48.77 | 74.39 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 296 | 424 | 9.05588E-15 | - |
| CDD | cd12108 | Hr-like | 642 | 801 | 4.71449E-24 | - |
| CDD | cd12108 | Hr-like | 41 | 167 | 5.1754E-32 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1113 | 1156 | 4.5078E-17 | - |
| Pfam | PF14599 | Zinc-ribbon | 1161 | 1215 | 1.1E-19 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 985 | 1060 | 4.0E-16 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 46 | 169 | 1.2E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 296 | 425 | 8.9E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 640 | 802 | 5.7E-6 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1113 | 1155 | 1.8E-6 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 976 | 1041 | 3.53E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1112 | 1160 | 1.65E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1051 | 1106 | 2.48E-14 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1107 | 1158 | 1.1E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 299 | 442 | 9.3E-16 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1185 | 1225 | 1.9E-11 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 37 | 187 | 1.2E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 637 | 850 | 9.2E-24 | - |
| SMART | SM00184 | ring_2 | 1114 | 1155 | 3.3E-4 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1050 | 1113 | 29.960827 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1114 | 1156 | 11.043484 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 978 | 1047 | 25.688431 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 890 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 886 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_015639096.1 | zinc finger protein BRUTUS isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1ENU1 | Zinc finger protein BRUTUS OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology