Basic Information
Locus ID:
Oco10G012670
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 18086347 | 18093063 | - | Oco10G012670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 103,448.45 Da | 34.95 | 88.04 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 654 | 885 | 4.8E-40 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 62 | 1.3E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 394 | 4.42E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 612 | 891 | 7.11E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 692 | 899 | 7.5E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 281 | 2.6E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 184 | 4.8E-41 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 603 | 691 | 1.7E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 282 | 424 | 3.0E-17 | IPR032675 |
| SMART | SM00220 | serkin_6 | 631 | 890 | 2.9E-19 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 265 | 287 | 7.280716 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 631 | 890 | 32.583832 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 735 | 747 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 933 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_052156938.1 | leucine-rich repeat receptor protein kinase HPCA1-like [Oryza glaberrima] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0L3Z7 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology