Basic Information
Locus ID:
Oco10G012420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 17778067 | 17782259 | - | Oco10G012420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 125,849.89 Da | 43.14 | 94.50 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 2 | 144 | 1.3845E-13 | IPR038005 |
| Pfam | PF18052 | Rx N-terminal domain | 8 | 92 | 2.6E-10 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 198 | 437 | 4.8E-43 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 548 | 862 | 2.9E-24 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 180 | 450 | 2.41E-55 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 3 | 147 | 5.3E-15 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 184 | 339 | 3.3E-30 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 436 | 525 | 1.9E-7 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 349 | 435 | 3.9E-15 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 547 | 691 | 2.0E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 692 | 916 | 1.6E-7 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 288 | 302 | 2.4E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 216 | 231 | 2.4E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 735 | 751 | 2.4E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 385 | 399 | 2.4E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1064 | 1097 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_015639260.1 | disease resistance protein RGA5-like [Oryza sativa Japonica Group] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0HG19 | Protein kinase domain-containing protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology