Basic Information
Locus ID:
Oco10G011970
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 17324561 | 17329692 | - | Oco10G011970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 69,024.22 Da | 48.24 | 89.81 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 380 | 587 | 1.5E-19 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 4.3E-11 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 377 | 594 | 1.01E-30 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 168 | 1.05E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 312 | 420 | 6.5E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 421 | 605 | 3.2E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 208 | 4.2E-39 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 590 | 15.312082 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 268 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45840.2 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_052155332.1 | protein MALE DISCOVERER 2-like isoform X2 [Oryza glaberrima] | 0 |
| C0LGQ4 | Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0L3P0 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.2078, BH05.2211, CH05.2292 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0369800, gene-QOZ80_5BG0417380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0071920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014129 |
| Poaceae | Oryza coarctata | 1 | Oco10G011970 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g39410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G173600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504591, Pt_Chr0504607 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G018700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G479000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG043980, gene_TRIDC1BG049810 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G296300.2, TraesCS1B02G305200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb290130_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14208, nbis-gene-24193 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27025, Zma_g28416 |