Basic Information
Locus ID:
Oco10G011800
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK13
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 17165782 | 17172038 | - | Oco10G011800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 60,807.67 Da | 43.07 | 83.10 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 451 | 513 | 9.27858E-19 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 73 | 331 | 3.39463E-134 | - |
| Pfam | PF13499 | EF-hand domain pair | 378 | 438 | 1.5E-9 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 74 | 332 | 9.5E-73 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 450 | 513 | 3.6E-13 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 72 | 339 | 3.37E-85 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 356 | 525 | 4.43E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 341 | 516 | 1.5E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 160 | 340 | 5.8E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 76 | 159 | 2.1E-24 | - |
| SMART | SM00054 | efh_1 | 487 | 515 | 1.6E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 74 | 332 | 1.5E-96 | IPR000719 |
| SMART | SM00054 | efh_1 | 415 | 443 | 1.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 379 | 407 | 4.8E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 451 | 479 | 2.0E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 483 | 518 | 14.764463 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 74 | 332 | 47.14185 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 375 | 410 | 15.545536 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 447 | 482 | 14.373928 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 460 | 472 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 194 | 206 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 80 | 103 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 388 | 400 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 496 | 508 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 53 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_040380311.1 | uncharacterized protein LOC102718271 [Oryza brachyantha] | 0 |
| Q6I5I8 | Calcium-dependent protein kinase 16 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK16 PE=3 SV=1 | 0 | |
| TrEMBL | I1PWG5 | Calcium-dependent protein kinase 30 OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology