Basic Information
Locus ID:
Oco10G011670
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 17016111 | 17024520 | - | Oco10G011670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 166,735.75 Da | 46.13 | 87.02 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1121 | 1512 | 2.47532E-100 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1168 | 1514 | 1.2E-77 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1114 | 1507 | 1.16E-92 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 110 | 531 | 1.24E-33 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1397 | 1512 | 1.4E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1066 | 1286 | 1.3E-37 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 542 | 4.4E-44 | IPR011989 |
| SMART | SM00119 | hect_3 | 1131 | 1514 | 5.0E-91 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1147 | 1514 | 60.288036 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 882 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 840 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 882 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_052155585.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Oryza glaberrima] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | I1PWE9 | HECT-type E3 ubiquitin transferase OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology