Basic Information
Locus ID:
Oco10G011650
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 17004800 | 17009446 | + | Oco10G011650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 128,762.72 Da | 51.55 | 67.18 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 212 | 298 | 4.31782E-28 | - |
| Pfam | PF00855 | PWWP domain | 212 | 299 | 3.4E-18 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 208 | 318 | 1.44E-25 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 207 | 305 | 2.2E-23 | - |
| SMART | SM00293 | PWWP_4 | 212 | 273 | 4.9E-8 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 214 | 275 | 14.826452 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1007 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1017 | 1031 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 137 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_006655385.1 | uncharacterized protein LOC102714099 [Oryza brachyantha] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EFJ5 | PWWP domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_007713 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology