Basic Information
Locus ID:
Oco10G010700
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 15735467 | 15736138 | - | Oco10G010700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 22,408.46 Da | 51.34 | 86.86 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 198 | 1.07236E-16 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 1.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 207 | 1.49E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 202 | 4.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 2.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.386007 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 132 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49230.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015638427.1 | RING-H2 finger protein ATL72 [Oryza sativa Japonica Group] | 0 |
| Q6NQG7 | RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0L319 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH05.2178, AH05.2286, CH05.2391, CH05.2484 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0371710, gene-QOZ80_5BG0419140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0075190.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_014503, gene-QYE76_014504, gene-QYE76_016977 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G010680, Oco10G010700 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g36310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G158800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G010400, Chr22G007240 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G447100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G274500.1.cds1, TraesCS1B02G284000.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14045 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27123 |