Basic Information
Locus ID:
Oco10G009590
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
E3 ubiquitin-protein ligase SGR9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 14219532 | 14220229 | - | Oco10G009590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 23,494.52 Da | 60.09 | 88.87 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 163 | 189 | 1.5E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 194 | 4.78E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 219 | 4.8E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 189 | 8.978064 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55530.3 | - | 0 |
| RefSeq | XP_052156932.1 | E3 ubiquitin-protein ligase SGR9, amyloplastic-like [Oryza glaberrima] | 0 |
| Q9CQ29 | RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3G7J4 | RING-type domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32077, jg32594 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4601 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015240 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g162370 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8476 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20115 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014710 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42881, Sgl47648, Sgl47671 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000008941 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0015150, CQ.Regalona.r1.8BG0016470 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30271610, pistato.v30272040 |
| Apiaceae | Apium graveolens | 1 | Ag3G02706 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G016880, scaffold008687G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710972 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1471.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G18219 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G02750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014308m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g39830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g057490.2N, BniB05g031020.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05040 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5923 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1341 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006365 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2495, BH05.2577, CH05.2687 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373490, gene-QOZ80_5BG0422770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0062490.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_013347, gene-QYE76_048232 |
| Poaceae | Oryza coarctata | 2 | Oco09G009010, Oco10G009590 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G142000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G020700, Chr12G017320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G423500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG038190, gene_TRIDC1BG043440 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G255600.1.cds1, TraesCS1B02G266300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb349550_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23845 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28231 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.411, evm.TU.LG13.1290, evm.TU.LG21.917 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10600 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1612, evm.TU.Scaffold_2_RagTag.817 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-4375, nbisL1-mrna-5318, nbisL1-mrna-5415 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18768, nbisL1-mrna-4605 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3860, nbisL1-mrna-9941 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.322, add.evm.TU.utg000016l.239 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005748, Maker00016305 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18771, nbisL1-mrna-21863 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-473, nbisL1-mrna-5905 |
| Salicaceae | Populus euphratica | 2 | populus_peu12537, populus_peu25821 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605400, gene-LOC132630132 |
| Solanaceae | Solanum chilense | 2 | SOLCI002775100, SOLCI004731500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107029814, gene-LOC107032316 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2926_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0590 |
| Zosteraceae | Zostera marina | 1 | Zosma02g25540.v3.1 |