Basic Information
Locus ID:
Oco10G009510
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 14095179 | 14097618 | + | Oco10G009510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 42,161.89 Da | 45.81 | 107.56 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 147 | 161 | 0.06 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 68 | 2.3E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 370 | 2.38E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 215 | 373 | 5.7E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 214 | 2.9E-39 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 148 | 170 | 7.134402 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 238 | 251 | 5.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 217 | 230 | 5.2E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_006654388.2 | LRR receptor-like serine/threonine-protein kinase ERL2 [Oryza brachyantha] | 0 |
| TrEMBL | A0A6G1EP22 | LRRNT_2 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_024112 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology