Basic Information
Locus ID:
Oco10G009120
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 13666608 | 13671517 | - | Oco10G009120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 40,060.76 Da | 70.74 | 57.73 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 300 | 340 | 3.26756E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 299 | 345 | 3.1E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 346 | 1.03E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 350 | 1.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 301 | 339 | 0.0034 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 301 | 340 | 11.191014 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 56 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052157010.1 | probable E3 ubiquitin-protein ligase LUL4 [Oryza glaberrima] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0L278 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology