Basic Information
Locus ID:
Oco10G007370
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 11361556 | 11364245 | - | Oco10G007370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 47,319.67 Da | 75.54 | 86.94 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 198 | 244 | 4.40313E-6 | - |
| Pfam | PF13639 | Ring finger domain | 197 | 244 | 7.0E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 251 | 3.25E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 250 | 8.9E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 198 | 243 | 0.0032 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 198 | 244 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 338 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052156426.1 | uncharacterized protein LOC127774199 [Oryza glaberrima] | 0 |
| TrEMBL | A0A6G1DCW6 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002928 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH05.2867 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0424050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0543630.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012963 |
| Poaceae | Oryza coarctata | 1 | Oco10G007370 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G107400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G010850 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G033600.1.cds1, TraesCS6D02G039100.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb351200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46503 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26658 |