Basic Information
Locus ID:
Oco10G006000
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 8900271 | 8905593 | - | Oco10G006000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 59,568.42 Da | 40.63 | 86.14 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 267 | 322 | 3.2E-12 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 3 | 244 | 1.81E-22 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 262 | 450 | 1.94E-23 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1 | 245 | 1.1E-14 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 333 | 450 | 4.2E-7 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 246 | 332 | 1.0E-12 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 262 | 534 | 16.570753 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_015619429.1 | glycerophosphodiester phosphodiesterase GDPDL4 [Oryza sativa Japonica Group] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9X5J4 | glycerophosphodiester phosphodiesterase OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology