Basic Information
Locus ID:
Oco10G004890
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 6086009 | 6089510 | + | Oco10G004890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 27,841.43 Da | 39.44 | 73.63 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 33 | 244 | 6.7E-74 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 148 | 237 | 5.4E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 145 | 250 | 6.2E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 150 | 238 | 26.365271 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 104 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_052155560.1 | auxin-responsive protein IAA17 [Oryza glaberrima] | 0 |
| Q75GB1 | Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0KZZ4 | Auxin-responsive protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology