halophFGD

Basic Information

Locus ID: Oco10G004760

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Belongs to the cullin family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG10	5893357	5899455	+	Oco10G004760

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.77	25,924.03 Da	46.13	97.90	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF74788	Cullin repeat-like	35	117	9.68E-7	IPR016159

KEGG Pathway

KO Term:

K03347 (cullin 1)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04350 (TGF-beta signaling pathway) map04350 (TGF-beta signaling pathway) ko04710 (Circadian rhythm)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G02570.1	cullin 1. Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
RefSeq	XP_052141078.1	cullin-1-like [Oryza glaberrima]
TrEMBL	A0A0E0JIX1	CULLIN_2 domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg12443, jg16422, jg28013
Aizoaceae	Mesembryanthemum crystallinum	3	gene_1614, gene_18764, gene_23561
Amaranthaceae	Atriplex hortensis	2	Ah022824, Ah022876
Amaranthaceae	Beta vulgaris	2	BVRB_1g002750, BVRB_1g003360
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg3908, Sbi_jg3983, Sbi_jg49132, Sbi_jg49194
Amaranthaceae	Salicornia europaea	2	Seu_jg6050, Seu_jg6109
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000561, GOSA_00000613
Amaranthaceae	Suaeda glauca	5	Sgl10874, Sgl10941, Sgl16227, Sgl16315, Sgl16348
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000012887, gene:ENSEOMG00000016493 ... gene:ENSEOMG00000033829, gene:ENSEOMG00000036675, gene:ENSEOMG00000046680, gene:ENSEOMG00000048769
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0001960, CQ.Regalona.r1.1AG0004860 ... CQ.Regalona.r1.2BG0025960, CQ.Regalona.r1.2BG0026510
Anacardiaceae	Pistacia vera	1	pistato.v30009670
Apiaceae	Apium graveolens	2	Ag5G02425, Ag8G01704
Arecaceae	Cocos nucifera	4	COCNU_04G009340, COCNU_04G009460, COCNU_04G009490 ... COCNU_16G003200
Arecaceae	Phoenix dactylifera	4	gene-LOC103707291, gene-LOC103716049, gene-LOC103716050 ... gene-LOC103723886
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.2104.V1.1, AsparagusV1_07.1008.V1.1 ... AsparagusV1_08.3136.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G12985, Ftri15G15633, Ftri15G33819, Ftri7G20258
Brassicaceae	Arabidopsis thaliana	4	AT1G02980.1, AT1G43140.1, AT1G59800.1, AT4G02570.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10009855m.g.v1.0, Thhalv10012200m.g.v1.0 ... Thhalv10028463m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g01970.v2.2, Sp6g02480.v2.2
Brassicaceae	Brassica nigra	6	BniB02g001010.2N, BniB03g038400.2N, BniB05g055060.2N ... BniB05g074630.2N, BniB05g074640.2N, BniB08g045180.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G0913, Ceq09G1180, Ceq09G1966
Casuarinaceae	Casuarina glauca	2	Cgl06G0941, Cgl09G1268
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g11610
Dunaliellaceae	Dunaliella salina	1	Dusal.0203s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g06680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6273, nbisL1-mrna-9638
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.57, evm.TU.LG04.300, evm.TU.LG11.1326
Plantaginaceae	Plantago ovata	4	Pov_00024646, Pov_00024845, Pov_00026161, Pov_00032463
Plumbaginaceae	Limonium bicolor	3	Lb7G34060, Lb7G34710, Lb8G36541
Poaceae	Echinochloa crus-galli	9	AH02.1641, AH02.1642, AH05.988, BH02.1707, BH02.1709 ... BH05.1031, CH02.1897, CH02.1900, CH05.1188
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0016750, gene-QOZ80_1BG0065860 ... gene-QOZ80_5AG0404850, gene-QOZ80_5BG0452960
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0022060.1, HORVU.MOREX.r3.1HG0022070.1 ... HORVU.MOREX.r3.3HG0225290.1
Poaceae	Lolium multiflorum	5	gene-QYE76_010178, gene-QYE76_010179, gene-QYE76_011078 ... gene-QYE76_018314, gene-QYE76_018316
Poaceae	Oryza coarctata	6	Oco01G010350, Oco01G010360, Oco02G010730, Oco09G002400 ... Oco10G002420, Oco10G004760
Poaceae	Oryza sativa	3	LOC_Os01g27150.1, LOC_Os01g27160.1, LOC_Os05g05700.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G152000, gene-BS78_03G152100 ... gene-BS78_09G045000
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102013, Pt_Chr0102029, Pt_Chr0202876, Pt_Chr0202904 ... Pt_Chr0502064, Pt_Chr0502065, Pt_Chr0502114, Pt_Chr0502115, Pt_Chr0603542
Poaceae	Sporobolus alterniflorus	6	Chr01G012290, Chr02G018820, Chr05G014890, Chr12G024360 ... Chr18G001050, Chr22G015180
Poaceae	Thinopyrum elongatum	3	Tel1E01G186200, Tel1E01G186300, Tel3E01G080100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG012850, gene_TRIDC1BG017060 ... gene_TRIDC3AG004270, gene_TRIDC3BG006030
Poaceae	Triticum aestivum	9	TraesCS1A02G089900.1, TraesCS1A02G090000.1 ... TraesCS1B02G117900.1, TraesCS1B02G118000.1, TraesCS1D02G098400.2, TraesCS1D02G098500.3, TraesCS3A02G039000.1, TraesCS3B02G044500.1, TraesCS3D02G040900.1
Poaceae	Zea mays	2	Zm00001eb354170_P002, Zm00001eb418160_P004
Poaceae	Zoysia japonica	2	nbis-gene-18184, nbis-gene-52864
Poaceae	Zoysia macrostachya	2	Zma_g26436, Zma_g27704
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.2130, evm.TU.LG04.2174, evm.TU.LG06.132 ... evm.TU.LG06.186, evm.TU.LG19.1264, evm.TU.LG24.1265
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g26890, gene.Posoc02g28020, gene.Posoc06g01510
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.44860.1, evm.TU.Scaffold_14_RagTag.295 ... evm.TU.Scaffold_3_RagTag.558, evm.TU.Scaffold_3_RagTag.559
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-1406, nbisL1-mrna-1410, nbisL1-mrna-16073 ... nbisL1-mrna-18082
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15907, nbisL1-mrna-21358, nbisL1-mrna-3946
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-512, nbisL1-mrna-6276, nbisL1-mrna-8422
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000007l.194, evm.TU.utg000011l.361 ... evm.TU.utg000019l.875, evm.TU.utg000019l.876
Rhizophoraceae	Kandelia obovata	3	Maker00008113, Maker00012597, Maker00018636
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-13716, nbisL1-mrna-16113, nbisL1-mrna-6271 ... nbisL1-mrna-6272
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10791, nbisL1-mrna-2022, nbisL1-mrna-3621
Salicaceae	Populus euphratica	5	populus_peu03439, populus_peu08107, populus_peu08108 ... populus_peu08135, populus_peu22126
Solanaceae	Lycium barbarum	4	gene-LOC132604915, gene-LOC132608452, gene-LOC132609064 ... gene-LOC132626821
Solanaceae	Solanum chilense	6	SOLCI001551900, SOLCI002364100, SOLCI002493900 ... SOLCI004742200, SOLCI004831100, SOLCI006323300
Solanaceae	Solanum pennellii	6	gene-LOC107006861, gene-LOC107022024, gene-LOC107023275 ... gene-LOC107026554, gene-LOC107030669, gene-LOC107031629
Tamaricaceae	Reaumuria soongarica	3	gene_4083, gene_9402, gene_9862
Tamaricaceae	Tamarix chinensis	3	TC06G1554, TC08G0626, TC12G1566
Zosteraceae	Zostera marina	2	Zosma02g17440.v3.1, Zosma03g30670.v3.1