Basic Information
Locus ID:
Oco10G004290
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 5034394 | 5035143 | + | Oco10G004290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 26,213.13 Da | 74.14 | 73.05 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 160 | 202 | 7.12106E-17 | - |
| Pfam | PF13639 | Ring finger domain | 159 | 202 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 208 | 1.34E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 207 | 3.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 160 | 201 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 202 | 12.090947 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 249 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015638534.1 | E3 ubiquitin-protein ligase EL5-like [Oryza sativa Japonica Group] | 0 |
| Q9SRM0 | RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0PIW4 | RING-type domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.639, BH05.691, CH05.795 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0401660, gene-QOZ80_5BG0450220 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0031470.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_010423, gene-QYE76_010463, gene-QYE76_051207 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G004480, Oco10G004290 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11490.1, LOC_Os05g11860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G083400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G025740, Chr18G004300, Chr22G012960 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G230700, Tel3E01G248200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG018190, gene_TRIDC1BG022260 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G126200.1.cds1, TraesCS1B02G145400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17972, nbis-gene-41783 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.13 |