Basic Information
Locus ID:
Oco10G003930
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 4276578 | 4290453 | + | Oco10G003930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 142,971.95 Da | 45.25 | 77.23 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 842 | 898 | 3.16793E-30 | - |
| Pfam | PF01426 | BAH domain | 584 | 696 | 1.5E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 858 | 896 | 9.7E-9 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 907 | 1268 | 1.2E-34 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 737 | 1269 | 4.78E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 828 | 905 | 3.67E-14 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 740 | 1286 | 8.8E-219 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1061 | 1235 | 8.8E-219 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 516 | 684 | 4.0E-45 | IPR043151 |
| SMART | SM00439 | BAH_4 | 582 | 699 | 3.1E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 842 | 901 | 4.4E-5 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 582 | 699 | 17.982555 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 843 | 896 | 11.851601 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 738 | 1276 | 45.545601 | IPR001525 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1251 | 1269 | - | IPR031303 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 866 | 886 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 913 | 925 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 956 | 970 | 2.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1002 | 1015 | 2.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 739 | 755 | 2.3E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_015639449.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0DNH4 | DNA (cytosine-5-)-methyltransferase OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology