Basic Information
Locus ID:
Oco10G003020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
divergent subfamily of APPLE domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 3067741 | 3074949 | - | Oco10G003020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 58,131.37 Da | 64.89 | 52.23 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 483 | 525 | 4.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 478 | 527 | 4.95E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 482 | 531 | 6.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 484 | 524 | 5.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 484 | 525 | 12.84335 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 381 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015639376.1 | probable E3 ubiquitin-protein ligase RHG1A isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0P0WI85 | Os05g0163400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0163400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology