Basic Information
Locus ID:
Oco10G002940
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CTLH/CRA C-terminal to LisH motif domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 3001086 | 3004496 | + | Oco10G002940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 45,846.23 Da | 41.57 | 83.44 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16659 | RING-Ubox_Emp | 345 | 394 | 1.46934E-27 | - |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 172 | 311 | 2.8E-36 | IPR024964 |
| SUPERFAMILY | SSF57850 | RING/U-box | 341 | 405 | 3.53E-6 | - |
| SMART | SM00757 | toby_final6 | 224 | 318 | 1.4E-22 | IPR013144 |
| SMART | SM00668 | ctlh | 171 | 228 | 6.1E-11 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 133 | 165 | 8.964658 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 171 | 228 | 12.347319 | IPR006595 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 319 | 392 | 14.773148 | IPR044063 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55070.1 | LisH/CRA/RING-U-box domains-containing protein. | 0 |
| RefSeq | XP_040379771.1 | protein MAEA homolog [Oryza brachyantha] | 0 |
| Q9M2V9 | Protein MAEA homolog OS=Arabidopsis thaliana OX=3702 GN=MAEA PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1ES60 | Macrophage erythroblast attacher OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033988 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9904 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7917 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033474 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g036720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20805, Sbi_jg22958 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16830 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009321 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62008, Sgl66568 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018932, gene:ENSEOMG00000019647 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0012510, CQ.Regalona.r1.7AG0012640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171880 |
| Apiaceae | Apium graveolens | 1 | Ag2G00659 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G004220, scaffold006606G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703852, gene-LOC103709901, gene-LOC103723006 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.298.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA28077 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010415m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07350.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g007290.2N, BniB05g056760.2N, BniB06g056910.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0688 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0696 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09230 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0632s00009.v1.0, Dusal.0632s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g09080, gene.Thate03g26410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7346 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.1511, evm.TU.LG05.270, evm.TU.LG05.272 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040092 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12395, Lb2G12423 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1073, BH05.1119, CH05.1267 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0403820, gene-QOZ80_5BG0452220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0024900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009872 |
| Poaceae | Oryza coarctata | 2 | Oco09G002890, Oco10G002940 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06760.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G060700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0501803 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G011880, Chr12G024770, Chr18G000540, Chr22G014690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G197200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015540, gene_TRIDC1BG019260 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G105500.1, TraesCS1B02G131000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb282460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18132 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27745 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.908, evm.TU.LG05.2030 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g16550, gene.Posoc03g28980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-26068, nbisL1-mrna-26069 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10750, nbisL1-mrna-18914 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14175, nbisL1-mrna-4481 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.110, evm.TU.utg000008l.928 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001392, Maker00010297 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2125, nbisL1-mrna-498 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19529, nbisL1-mrna-9505 |
| Salicaceae | Populus euphratica | 1 | populus_peu06354 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615745 |
| Solanaceae | Solanum chilense | 1 | SOLCI006205200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018185 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4877 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3514 |
| Zosteraceae | Zostera marina | 1 | Zosma03g17810.v3.1 |