Basic Information
Locus ID:
Oco10G002650
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 2699872 | 2703046 | + | Oco10G002650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 55,330.38 Da | 41.48 | 96.41 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 187 | 234 | 7.7E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 263 | 283 | 0.089 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 364 | 388 | 0.05 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 326 | 351 | 0.45 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 85 | 115 | 2.0E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 291 | 321 | 8.2E-7 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 250 | 1.9E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 136 | 3.1E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 287 | 476 | 8.1E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 85 | 118 | 1.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 190 | 220 | 1.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 291 | 324 | 1.6E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 83 | 117 | 11.4875 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 188 | 222 | 10.533867 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 289 | 323 | 11.23539 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03880.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_015638245.1 | pentatricopeptide repeat-containing protein At2g13600 [Oryza sativa Japonica Group] | 0 |
| Q9SI53 | Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0H9R8 | DYW_deaminase domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_12G001960 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2086.V1.1, AsparagusV1_05.1757.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1818, CH04.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0404360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0023140.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009601, gene-QYE76_048342 |
| Poaceae | Oryza coarctata | 1 | Oco10G002650 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G055000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr18G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G205800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017020, gene_TRIDC1BG017900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G094800.1.cds1, TraesCS1B02G122700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18170 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27717 |