Basic Information
Locus ID:
Oco10G002490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 2525411 | 2531773 | - | Oco10G002490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 64,386.86 Da | 49.91 | 94.51 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 78 | 124 | 1.9E-18 | IPR041101 |
| Pfam | PF18511 | F-box | 20 | 58 | 2.5E-6 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 167 | 182 | 0.11 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 53 | 7.59E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 543 | 2.62E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 588 | 7.4E-164 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 57 | 4.5E-9 | - |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 404 | 0.67 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 489 | 513 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 440 | 463 | 450.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_015639834.1 | transport inhibitor response 1-like protein Os05g0150500 [Oryza sativa Japonica Group] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0DM43 | Transport inhibitor response 1-like protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology