Basic Information
Locus ID:
Oco10G001230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 1110701 | 1116760 | + | Oco10G001230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 135,896.00 Da | 47.38 | 91.33 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 874 | 1192 | 1.6E-69 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 822 | 1192 | 4.84E-81 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 6 | 282 | 6.17E-11 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 828 | 1092 | 2.2E-39 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1098 | 1195 | 2.2E-21 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 313 | 1.5E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 962 | 1057 | 2.2E-39 | - |
| SMART | SM00119 | hect_3 | 836 | 1199 | 1.1E-68 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 852 | 1192 | 53.204201 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 599 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.2 | - | 0 |
| RefSeq | XP_015638473.2 | E3 ubiquitin-protein ligase UPL4 [Oryza sativa Japonica Group] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0KXY3 | HECT-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology