Basic Information
Locus ID:
Oco10G000550
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 452276 | 454819 | + | Oco10G000550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 41,336.67 Da | 79.05 | 61.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 196 | 237 | 1.50261E-23 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 259 | 366 | 7.8E-42 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 195 | 237 | 4.0E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 21 | 54 | 5.3E-18 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 176 | 243 | 2.19E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 243 | 5.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 236 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 237 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 386 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006654903.2 | E3 ubiquitin-protein ligase RDUF2-like [Oryza brachyantha] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5W059 | RING-type E3 ubiquitin transferase OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0005g14570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology