Basic Information
Locus ID:
Oco09G017930
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 22963648 | 22968809 | - | Oco09G017930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 93,486.75 Da | 46.15 | 86.74 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 527 | 660 | 2.56034E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 529 | 659 | 2.7E-37 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 682 | 725 | 6.8E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 489 | 725 | 9.89E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 661 | 746 | 7.9E-96 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 488 | 754 | 7.9E-96 | IPR027417 |
| SMART | SM00382 | AAA_5 | 525 | 662 | 1.4E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 632 | 651 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 197 | - | - |
| Coils | Coil | Coil | 713 | 741 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_040380234.1 | peroxisomal biogenesis factor 6-like [Oryza brachyantha] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0L695 | AAA domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology