Basic Information
Locus ID:
Oco09G017590
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 22626876 | 22627400 | - | Oco09G017590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 18,586.88 Da | 38.38 | 91.03 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 102 | 164 | 3.07508E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 25 | 85 | 2.3E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 101 | 163 | 3.5E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 10 | 164 | 5.64E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 12 | 96 | 3.8E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 97 | 169 | 9.6E-24 | - |
| SMART | SM00054 | efh_1 | 62 | 90 | 0.35 | IPR002048 |
| SMART | SM00054 | efh_1 | 138 | 166 | 1.5E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 102 | 130 | 1.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 26 | 54 | 0.0015 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 98 | 133 | 14.90394 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 22 | 57 | 14.039183 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 58 | 93 | 9.352757 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 134 | 169 | 13.592857 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 35 | 47 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 71 | 83 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 147 | 159 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 111 | 123 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_006655624.2 | probable calcium-binding protein CML14 [Oryza brachyantha] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D9WK40 | Calcium-binding protein CML14 OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology