Basic Information
Locus ID:
Oco09G016060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 21272592 | 21281603 | + | Oco09G016060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 140,019.33 Da | 45.58 | 75.55 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 641 | 800 | 8.09998E-26 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1110 | 1153 | 2.06459E-17 | - |
| CDD | cd12108 | Hr-like | 40 | 166 | 2.30196E-31 | - |
| CDD | cd12108 | Hr-like | 295 | 423 | 6.07412E-11 | - |
| Pfam | PF05495 | CHY zinc finger | 982 | 1057 | 3.0E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 44 | 168 | 3.0E-12 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1158 | 1215 | 6.2E-22 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 639 | 801 | 1.1E-6 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1110 | 1152 | 1.3E-6 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1048 | 1103 | 6.54E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1109 | 1157 | 1.71E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 973 | 1038 | 8.63E-18 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 35 | 185 | 2.6E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 298 | 441 | 2.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1104 | 1155 | 5.0E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1182 | 1222 | 1.2E-14 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 636 | 831 | 1.1E-22 | - |
| SMART | SM00184 | ring_2 | 1111 | 1152 | 6.4E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1047 | 1110 | 29.881184 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1111 | 1153 | 11.087743 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 975 | 1044 | 25.120142 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_006654746.2 | zinc finger protein BRUTUS-like isoform X1 [Oryza brachyantha] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1ENU1 | Zinc finger protein BRUTUS OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology