halophFGD

Basic Information

Locus ID: Oco09G014390

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG09	20013116	20020692	-	Oco09G014390

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.34	91,993.18 Da	51.91	87.81	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	25	65	7.4E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	24	71	5.1E-9	IPR036047
SUPERFAMILY	SSF81383	F-box domain	323	412	1.57E-6	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	20	76	1.3E-5	-
SMART	SM00256	fbox_2	315	354	12.0	IPR001810
SMART	SM00256	fbox_2	25	65	0.0092	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	717	738	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	572	597	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G23880.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_015627441.1	uncharacterized protein LOC4329691 [Oryza sativa Japonica Group]
Swiss-Prot	Q9LIR8	F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1
TrEMBL	A0A0D9V2J0	F-box domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g26440
Plantaginaceae	Plantago ovata	1	Pov_00001437
Poaceae	Echinochloa crus-galli	36	AH01.3042, AH02.3358, AH05.1506, AH05.1507, AH06.376 ... AH07.2619, AH07.811, AH08.1670, BH01.2005, BH01.2038, BH01.2076, BH01.803, BH06.1811, BH07.2431, BH07.933, BH07.934, BH07.936, BH07.938, BH07.940, BH09.726, BH09.729, CH01.2070, CH01.2081, CH01.2082, CH01.2111, CH05.1885, CH07.691, CH07.696, CH08.966, CH09.2969, Contig2934.1, Contig309.144, Contig328.102, Contig328.19, Contig328.83, Contig328.86
Poaceae	Eleusine coracana subsp. coracana	37	gene-QOZ80_2AG0105870, gene-QOZ80_2AG0112090 ... gene-QOZ80_2AG0128460, gene-QOZ80_2AG0128470, gene-QOZ80_2AG0128490, gene-QOZ80_2AG0137510, gene-QOZ80_2BG0159280, gene-QOZ80_2BG0159300, gene-QOZ80_2BG0165500, gene-QOZ80_2BG0181130, gene-QOZ80_2BG0183770, gene-QOZ80_2BG0183870, gene-QOZ80_2BG0183890, gene-QOZ80_2BG0184140, gene-QOZ80_3AG0217000, gene-QOZ80_3BG0262280, gene-QOZ80_3BG0262470, gene-QOZ80_4AG0321250, gene-QOZ80_4AG0321270, gene-QOZ80_4BG0352180, gene-QOZ80_4BG0356940, gene-QOZ80_4BG0356970, gene-QOZ80_4BG0356990, gene-QOZ80_4BG0357010, gene-QOZ80_5AG0364670, gene-QOZ80_5AG0364710, gene-QOZ80_5AG0365020, gene-QOZ80_5BG0412370, gene-QOZ80_5BG0412650, gene-QOZ80_5BG0412900, gene-QOZ80_5BG0446890, gene-QOZ80_8AG0633810, gene-QOZ80_8BG0660770, gene-QOZ80_8BG0661040, gene-QOZ80_8BG0662850, gene-QOZ80_9AG0674200, gene-QOZ80_9AG0674340
Poaceae	Hordeum vulgare	13	HORVU.MOREX.r3.1HG0045230.1.CDS1 ... HORVU.MOREX.r3.1HG0085460.1.CDS1, HORVU.MOREX.r3.1HG0085480.1.CDS1, HORVU.MOREX.r3.2HG0196840.1.CDS1, HORVU.MOREX.r3.2HG0196850.1.CDS1, HORVU.MOREX.r3.4HG0382150.1.CDS1, HORVU.MOREX.r3.4HG0397230.1.CDS1, HORVU.MOREX.r3.5HG0506250.1.CDS1, HORVU.MOREX.r3.5HG0506280.1.CDS1, HORVU.MOREX.r3.5HG0533100.1.CDS1, HORVU.MOREX.r3.6HG0547780.1.CDS1, HORVU.MOREX.r3.6HG0632730.1.CDS1, HORVU.MOREX.r3.7HG0658860.1.CDS1
Poaceae	Lolium multiflorum	55	gene-QYE76_001382, gene-QYE76_001898, gene-QYE76_003730 ... gene-QYE76_006979, gene-QYE76_009060, gene-QYE76_009061, gene-QYE76_009062, gene-QYE76_009063, gene-QYE76_009066, gene-QYE76_009067, gene-QYE76_009512, gene-QYE76_010515, gene-QYE76_011461, gene-QYE76_011632, gene-QYE76_013762, gene-QYE76_015613, gene-QYE76_015628, gene-QYE76_015629, gene-QYE76_015635, gene-QYE76_015672, gene-QYE76_015673, gene-QYE76_015674, gene-QYE76_018494, gene-QYE76_019836, gene-QYE76_027694, gene-QYE76_029440, gene-QYE76_030761, gene-QYE76_032747, gene-QYE76_032779, gene-QYE76_033739, gene-QYE76_033760, gene-QYE76_033761, gene-QYE76_033762, gene-QYE76_035036, gene-QYE76_035376, gene-QYE76_035377, gene-QYE76_036236, gene-QYE76_036242, gene-QYE76_036246, gene-QYE76_036247, gene-QYE76_036258, gene-QYE76_036557, gene-QYE76_040664, gene-QYE76_043485, gene-QYE76_043490, gene-QYE76_048443, gene-QYE76_058094, gene-QYE76_058786, gene-QYE76_060543, gene-QYE76_060544, gene-QYE76_060758, gene-QYE76_061213, gene-QYE76_061477, gene-QYE76_061694, gene-QYE76_061994
Poaceae	Oryza coarctata	20	Oco02G009690, Oco09G005800, Oco09G014390, Oco09G014490 ... Oco09G014570, Oco10G014540, Oco18G010160, Oco18G011840, Oco18G011850, Oco18G011900, Oco19G006340, Oco19G006380, Oco19G006400, Oco19G006570, Oco20G004030, Oco20G006370, Oco20G006390, Oco20G006560, Oco23G010650, Oco24G010470
Poaceae	Oryza sativa	22	LOC_Os01g07160.1, LOC_Os01g07190.1, LOC_Os01g67790.1 ... LOC_Os02g35560.1, LOC_Os02g54240.1, LOC_Os04g49950.1, LOC_Os05g02540.1, LOC_Os05g02550.1, LOC_Os05g02570.1, LOC_Os05g44370.1, LOC_Os05g44580.1, LOC_Os06g12140.1, LOC_Os07g16420.1, LOC_Os07g16800.1, LOC_Os08g14710.1, LOC_Os09g39000.1, LOC_Os10g34280.1, LOC_Os10g34300.1, LOC_Os10g34340.1, LOC_Os10g36310.1, LOC_Os12g42340.1, LOC_Os12g42360.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G196000, gene-BS78_01G199300, gene-BS78_K179100 ... gene-BS78_04G041500, gene-BS78_04G197900, gene-BS78_09G220500, gene-BS78_09G220700, gene-BS78_09G224900, gene-BS78_09G225000, gene-BS78_09G225100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0105878, Pt_Chr0304940, Pt_Chr0304975, Pt_Chr0304977 ... Pt_Chr0502618, Pt_Chr0504301, Pt_Chr0505766, Pt_Chr0605708, Pt_Chr0702143
Poaceae	Sporobolus alterniflorus	22	Chr01G014930, Chr06G014740, Chr09G011690, Chr09G025790 ... Chr0G011240, Chr0G011260, Chr12G001310, Chr12G021930, Chr12G021940, Chr13G007420, Chr13G007440, Chr13G013570, Chr13G013580, Chr15G016770, Chr16G001410, Chr20G004320, Chr22G002140, Chr22G002150, Chr23G003060, Chr26G014250, Chr26G014260, Chr29G004200
Poaceae	Thinopyrum elongatum	24	Tel1E01G294900, Tel1E01G627500, Tel1E01G628100 ... Tel1E01G628600, Tel1E01G628700, Tel1E01G639900, Tel2E01G765300, Tel2E01G765700, Tel2E01G766300, Tel2E01G861600, Tel2E01G862300, Tel2E01G862400, Tel5E01G067000, Tel5E01G067100, Tel5E01G067200, Tel5E01G067600, Tel5E01G660200, Tel5E01G660300, Tel6E01G058500, Tel6E01G087200, Tel7E01G177200, Tel7E01G692400, Tel7E01G693500, Tel7E01G695000
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG057380, gene_TRIDC1BG064970-44813 ... gene_TRIDC1BG064970-6816, gene_TRIDC1BG069610, gene_TRIDC2AG064380, gene_TRIDC2BG068710, gene_TRIDC3AG050000, gene_TRIDC4AG059420, gene_TRIDC4AG059450, gene_TRIDC5AG004090, gene_TRIDC5BG004250, gene_TRIDC7BG007410
Poaceae	Triticum aestivum	54	TraesCS1A02G078500.1.cds1, TraesCS1A02G384100.1.cds1 ... TraesCS1A02G385300.1, TraesCS1B02G308400.1, TraesCS1B02G313600.1.cds1, TraesCS1B02G332800.1.cds1, TraesCS1B02G396500.1.cds1, TraesCS1B02G410900.1.cds1, TraesCS1B02G411400.1.cds1, TraesCS1B02G411600.1.cds1, TraesCS1B02G418700.1.cds1, TraesCS1B02G442700.1.cds1, TraesCS1B02G467200.1.cds1, TraesCS1D02G158800.1, TraesCS1D02G320500.1, TraesCS1D02G392600.1.cds1, TraesCS1D02G392800.1.cds1, TraesCS1D02G392900.1.cds1, TraesCS2A02G038600.1.cds1, TraesCS2A02G450900.1, TraesCS2B02G472700.1.cds1, TraesCS2B02G535900.1.cds1, TraesCS2D02G038000.1.cds1, TraesCS2D02G508500.1, TraesCS3A02G371600.1.cds1, TraesCS3B02G009800.1.cds1, TraesCS3B02G195000.1.cds1, TraesCS3B02G403900.1, TraesCS4A02G382500.1.cds1, TraesCS4A02G382600.1.cds1, TraesCS4D02G314600.1, TraesCS5A02G027700.1, TraesCS5A02G494000.1, TraesCS5B02G026800.1.cds1, TraesCS5B02G026900.1.cds1, TraesCS5B02G027100.1.cds1, TraesCS5B02G027200.1.cds1, TraesCS5B02G422300.1.cds1, TraesCS5D02G035400.1.cds1, TraesCS5D02G035500.1.cds1, TraesCS6A02G017200.1, TraesCS6A02G017800.1.cds1, TraesCS6A02G056700.1.cds1, TraesCS6B02G076200.1.cds1, TraesCS6B02G315000.1.cds1, TraesCS6B02G473100.1.cds1, TraesCS6D02G060000.1.cds1, TraesCS7A02G084200.1.cds1, TraesCS7B02G050600.1.cds1, TraesCS7B02G313100.1.cds1, TraesCS7B02G372900.1.cds1, TraesCS7D02G079200.1.cds1, TraesCS7D02G149100.1.cds1, TraesCS7D02G353200.1.cds1
Poaceae	Zoysia japonica	1	nbis-gene-47752
Poaceae	Zoysia macrostachya	1	Zma_g23115