Basic Information
Locus ID:
Oco09G013680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 19439952 | 19444486 | + | Oco09G013680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 65,971.08 Da | 43.09 | 63.37 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 268 | 398 | 5.8051E-43 | IPR033734 |
| CDD | cd09612 | Jacalin | 454 | 580 | 2.2325E-42 | IPR033734 |
| CDD | cd09612 | Jacalin | 22 | 152 | 1.25658E-46 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 451 | 580 | 7.6E-29 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 152 | 1.1E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 268 | 398 | 1.7E-29 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 437 | 580 | 3.01E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 253 | 397 | 1.44E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 151 | 3.01E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 245 | 398 | 5.4E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 431 | 580 | 9.1E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 152 | 1.6E-56 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 268 | 399 | 9.5E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 451 | 581 | 3.5E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 22 | 153 | 2.9E-41 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 153 | 51.236507 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 257 | 399 | 47.156559 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 440 | 581 | 48.666607 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_015693220.2 | jacalin-related lectin 3-like [Oryza brachyantha] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | J3M8Q2 | Jacalin-related lectin 3 OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology