Basic Information
Locus ID:
Oco09G013030
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 18750180 | 18751082 | - | Oco09G013030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 32,600.32 Da | 73.66 | 63.37 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 190 | 231 | 5.07056E-22 | - |
| Pfam | PF13639 | Ring finger domain | 189 | 231 | 5.2E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 38 | 2.6E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 237 | 1.94E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 237 | 9.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 230 | 7.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 231 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 273 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_040380165.1 | E3 ubiquitin-protein ligase RZF1-like [Oryza brachyantha] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0L486 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology