Basic Information
Locus ID:
Oco09G012570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 18379522 | 18383815 | - | Oco09G012570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 81,987.17 Da | 31.83 | 82.73 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 423 | 688 | 1.23669E-94 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 421 | 684 | 2.1E-47 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 3 | 178 | 1.85E-27 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 403 | 694 | 1.04E-77 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 3 | 68 | 1.4E-15 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 704 | 5.7E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 69 | 211 | 2.1E-15 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 389 | 492 | 2.8E-36 | - |
| SMART | SM00220 | serkin_6 | 417 | 691 | 1.0E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 417 | 691 | 39.113739 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 50 | 72 | 7.565642 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 423 | 445 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 536 | 548 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 736 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006655431.2 | leucine-rich repeat receptor protein kinase HPCA1-like [Oryza brachyantha] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1ELQ9 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016641 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology