Basic Information
Locus ID:
Oco09G011940
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 17666437 | 17669082 | + | Oco09G011940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 65,351.84 Da | 32.26 | 89.50 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 1.35936E-90 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 206 | 5.51402E-92 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 357 | 5.9E-21 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 4.5E-16 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 209 | 3.2E-35 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 236 | 383 | 2.57E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 1.23E-43 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 213 | 1.41E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 3.8E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 7.2E-60 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 590 | 1.7E-58 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 600 | 4.5E-219 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_052156770.1 | pyruvate decarboxylase 1 isoform X1 [Oryza glaberrima] | 0 |
| A2Y5L9 | Pyruvate decarboxylase 1 OS=Oryza sativa subsp. indica OX=39946 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0HFV4 | pyruvate decarboxylase OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology