Basic Information
Locus ID:
Oco09G011840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK13
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 17574116 | 17581202 | - | Oco09G011840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 61,119.94 Da | 43.43 | 83.04 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 77 | 335 | 2.21984E-134 | - |
| CDD | cd00051 | EFh | 455 | 517 | 5.05858E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 454 | 517 | 4.8E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 382 | 442 | 2.0E-9 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 78 | 336 | 2.3E-73 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 76 | 343 | 6.34E-85 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 360 | 529 | 6.51E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 345 | 520 | 8.6E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 164 | 344 | 1.2E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 80 | 163 | 4.4E-25 | - |
| SMART | SM00054 | efh_1 | 455 | 483 | 6.9E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 383 | 411 | 8.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 491 | 519 | 1.6E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 419 | 447 | 1.5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 78 | 336 | 7.6E-96 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 451 | 486 | 14.624987 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 487 | 522 | 14.764463 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 379 | 414 | 15.238686 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 78 | 336 | 47.113583 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 464 | 476 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 198 | 210 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 84 | 107 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 500 | 512 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 392 | 404 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 56 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_040380311.1 | uncharacterized protein LOC102718271 [Oryza brachyantha] | 0 |
| Q6I5I8 | Calcium-dependent protein kinase 16 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK16 PE=3 SV=1 | 0 | |
| TrEMBL | I1PWG5 | Calcium-dependent protein kinase 30 OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology