Basic Information
Locus ID:
Oco09G011700
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 17427463 | 17435511 | - | Oco09G011700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 168,755.81 Da | 46.20 | 85.51 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1148 | 1539 | 9.30208E-103 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1195 | 1541 | 2.0E-79 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 139 | 559 | 4.4E-33 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1141 | 1534 | 4.19E-95 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1423 | 1539 | 1.9E-34 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 126 | 568 | 9.4E-46 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1093 | 1314 | 2.0E-37 | - |
| SMART | SM00119 | hect_3 | 1158 | 1541 | 3.1E-93 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1174 | 1541 | 61.156075 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 113 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_052155585.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Oryza glaberrima] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D9WHF7 | HECT-type E3 ubiquitin transferase OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology