Basic Information
Locus ID:
Oco09G011680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 17408544 | 17413075 | + | Oco09G011680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 135,106.45 Da | 47.56 | 65.90 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 303 | 389 | 8.46075E-28 | - |
| Pfam | PF00855 | PWWP domain | 303 | 390 | 1.7E-17 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 299 | 411 | 7.82E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 298 | 396 | 9.4E-23 | - |
| SMART | SM00293 | PWWP_4 | 303 | 364 | 7.8E-8 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 305 | 366 | 14.531036 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 931 | 947 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 929 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1077 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1060 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_006655385.1 | uncharacterized protein LOC102714099 [Oryza brachyantha] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EFJ5 | PWWP domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_007713 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology