Basic Information
Locus ID:
Oco09G009400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Chitinase class I
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 14782701 | 14783842 | - | Oco09G009400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 32,444.95 Da | 41.01 | 61.14 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 91 | 290 | 4.85284E-85 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 31 | 70 | 1.5849E-19 | - |
| Pfam | PF00182 | Chitinase class I | 142 | 290 | 3.3E-84 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 32 | 69 | 4.9E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 90 | 141 | 1.2E-18 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 87 | 297 | 1.07E-91 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 32 | 79 | 6.55E-13 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 86 | 143 | 1.4E-17 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 200 | 296 | 2.9E-80 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 144 | 199 | 2.9E-80 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 30 | 72 | 9.4E-16 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 32 | 69 | 3.3E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 6 | 142 | 1.0E-34 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 140 | 297 | 1.2E-69 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 30 | 71 | 10.890805 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 108 | 130 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 203 | 213 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 48 | 55 | 7.3E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 55 | 62 | 7.3E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 40 | 48 | 7.3E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_006655296.2 | chitinase 2 [Oryza brachyantha] | 0 |
| Q7DNA1 | Chitinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0L292 | chitinase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology