Basic Information
Locus ID:
Oco09G009390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 14768440 | 14769698 | - | Oco09G009390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.38 | 33,541.25 Da | 35.70 | 61.87 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 86 | 308 | 7.59355E-82 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 60 | 3.47623E-17 | - |
| Pfam | PF00187 | Chitin recognition protein | 22 | 59 | 1.1E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 85 | 308 | 3.8E-98 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 63 | 2.49E-12 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 82 | 315 | 2.25E-83 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 90 | 314 | 3.9E-93 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 61 | 1.1E-15 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 161 | 217 | 3.9E-93 | - |
| SMART | SM00270 | ChitinBD_3 | 22 | 59 | 8.1E-17 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 315 | 5.5E-115 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 61 | 10.915667 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 103 | 125 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 4.1E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 164 | 171 | 4.1E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 4.1E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_040380575.1 | chitinase 7-like [Oryza brachyantha] | 0 |
| Q7Y1Z1 | Chitinase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1EEZ1 | chitinase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology