Basic Information
Locus ID:
Oco09G009330
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box FBD LRR-repeat protein At4g03220
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 14696772 | 14699149 | + | Oco09G009330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 53,080.46 Da | 43.28 | 110.57 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 63 | 9.55E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 63 | 2.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034605033.1 | uncharacterized protein LOC117865063 isoform X2 [Setaria viridis] | 0 |
| TrEMBL | A0A4U6U8L9 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G249500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 21 | AH01.379, AH06.351, BH01.347, BH01.349, BH01.350, BH01.351 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0334820 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006876 |
| Poaceae | Oryza coarctata | 6 | Oco05G027310, Oco09G009330, Oco15G005400, Oco21G001910 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os03g25670.1, LOC_Os08g17110.1 |
| Poaceae | Paspalum vaginatum | 9 | gene-BS78_01G032200, gene-BS78_01G344200, gene-BS78_K091300 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G001580, Chr12G033300, Chr23G004370 |