Basic Information
Locus ID:
Oco09G008990
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin-associated translation elongation factor EF1B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 14350969 | 14355203 | + | Oco09G008990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 74,428.32 Da | 57.49 | 61.80 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14270 | UBA | 236 | 264 | 7.26559E-6 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 233 | 269 | 9.45E-7 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 193 | 284 | 1.6E-8 | - |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 218 | 270 | 9.101008 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 335 | - | - |
| Coils | Coil | Coil | 312 | 346 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26920.1 | Ubiquitin-associated/translation elongation factor EF1B protein. | 0 |
| RefSeq | XP_006654396.1 | uncharacterized protein LOC102703121 [Oryza brachyantha] | 0 |
| TrEMBL | A0A0P0WM72 | Os05g0409000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0409000 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16375, jg35636, jg37673, jg8489 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10163 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005118 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g074310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17365, Sbi_jg62013 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg630 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015521 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24309, Sgl29485 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009107, gene:ENSEOMG00000029570 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002650, CQ.Regalona.r1.4BG0002770 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168540 |
| Apiaceae | Apium graveolens | 1 | Ag1G00164 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G016860, COCNU_16G000920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710964, gene-LOC103721664 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1907.V1.1, AsparagusV1_08.1791.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G21667, Ftri7G16648 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26920.1, AT5G12120.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001930m.g.v1.0, Thhalv10012987m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g08440.v2.2, Sp6g31510.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g049980.2N, BniB05g025520.2N, BniB08g005710.2N |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0946, Cgl05G1678 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04510 |
| Hydrocharitaceae | Thalassia testudinum | 7 | gene.Thate01g28630, gene.Thate02g11120, gene.Thate02g15760 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-397 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2052 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00012236, Pov_00017123, Pov_00026667 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373470, gene-QOZ80_5BG0420740 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0062470.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_048227 |
| Poaceae | Oryza coarctata | 2 | Oco09G008990, Oco10G009610 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G142200 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G020680, Chr12G017340, Chr18G009100, Chr22G008530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G423900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG038220, gene_TRIDC1BG043470 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G255900.1.cds1, TraesCS1B02G266600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287870_P001, Zm00001eb349540_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13913, nbis-gene-23847, nbis-gene-30126 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27220, Zma_g28233 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1654, evm.TU.LG20.229 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g09590, gene.Posoc06g22250 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.120 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16862, nbisL1-mrna-7212 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-13044, nbisL1-mrna-14499, nbisL1-mrna-16450 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14461, nbisL1-mrna-17308, nbisL1-mrna-17309 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000005l.130, add.evm.TU.utg000025l.77 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00010224, Maker00012304, Maker00012375 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-16890, nbisL1-mrna-20149, nbisL1-mrna-8609 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-22005, nbisL1-mrna-23012, nbisL1-mrna-23014 |
| Salicaceae | Populus euphratica | 4 | populus_peu04194, populus_peu11997, populus_peu35017 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600762, gene-LOC132600763 |
| Solanaceae | Solanum chilense | 2 | SOLCI000260600, SOLCI004576800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005124, gene-LOC107023304 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10519_chr07_+, gene_4727 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1616, TC02G2957 |
| Zosteraceae | Zostera marina | 1 | Zosma03g29910.v3.1 |