Basic Information
Locus ID:
Oco09G006110
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 9557744 | 9567084 | - | Oco09G006110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 63,102.84 Da | 49.35 | 81.13 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 223 | 538 | 9.3E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 182 | 574 | 6.97E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 174 | 569 | 2.1E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 432 | 453 | 4.7 | IPR006626 |
| SMART | SM00710 | pbh1 | 461 | 482 | 2600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 402 | 422 | 4300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 352 | 378 | 250.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 379 | 400 | 200.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 409 | 422 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_006654203.1 | polygalacturonase At1g48100 [Oryza brachyantha] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | J3M5H2 | Polygalacturonase OS=Oryza brachyantha OX=4533 GN=102716215 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology