Basic Information
Locus ID:
Oco09G005710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 7977815 | 7993684 | - | Oco09G005710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 49,355.22 Da | 41.98 | 96.65 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 116 | 151 | 4.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 313 | 7.2E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 68 | 352 | 3.75E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 168 | 7.6E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 179 | 369 | 2.7E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 274 | 313 | 9.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 260 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 219 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 3.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 75 | 110 | 180.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 281 | 315 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 155 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 120 | 155 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 281 | 322 | 14.719144 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 300 | 314 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49180.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_040379868.1 | protein ROOT INITIATION DEFECTIVE 3-like [Oryza brachyantha] | 0 |
| Q9M3B4 | Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1 | 0 | |
| TrEMBL | J3M5S7 | WD_REPEATS_REGION domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco09G005710, Oco10G006270 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g23560.1 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G003560, Chr17G003240 |