Basic Information
Locus ID:
Oco09G004880
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 6214863 | 6228721 | - | Oco09G004880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 147,720.67 Da | 44.98 | 79.71 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 884 | 940 | 1.17953E-31 | - |
| Pfam | PF01426 | BAH domain | 594 | 676 | 3.7E-8 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 886 | 938 | 9.1E-9 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 946 | 1310 | 2.5E-34 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 871 | 946 | 9.71E-16 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 779 | 1311 | 4.87E-76 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 522 | 694 | 9.9E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 782 | 1328 | 1.0E-218 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1103 | 1277 | 1.0E-218 | - |
| SMART | SM00439 | BAH_4 | 592 | 720 | 2.4E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 884 | 943 | 8.3E-8 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 780 | 1318 | 45.683811 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 885 | 938 | 11.924001 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 592 | 711 | 16.899715 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 955 | 967 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1293 | 1311 | - | IPR031303 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 908 | 928 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1044 | 1057 | 2.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 781 | 797 | 2.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 998 | 1012 | 2.5E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 306 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_006655109.2 | DNA (cytosine-5)-methyltransferase CMT2-like [Oryza brachyantha] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1ERT2 | DNA (cytosine-5-)-methyltransferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_031953 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology