Basic Information
Locus ID:
Oco09G004560
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 5571142 | 5573416 | - | Oco09G004560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 14,050.95 Da | 46.92 | 81.02 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 17 | 101 | 2.6E-7 | IPR003653 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 8 | 95 | 4.71E-9 | IPR038765 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 9 | 110 | 2.7E-7 | - |
| Coils | Coil | Coil | 28 | 48 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052134002.1 | uncharacterized protein LOC127752634 [Oryza glaberrima] | 0 |
| TrEMBL | I1QSE0 | ULP_PROTEASE domain-containing protein OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 9 | AH01.1897, AH04.860, AH07.1629, BH04.533, BH04.967, BH07.812 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G009010, Oco05G016430, Oco09G004560, Oco10G016000 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os06g28030.1 |
| Poaceae | Sporobolus alterniflorus | 13 | Chr02G009070, Chr06G027180, Chr06G027640, Chr08G004160 ... |
| Poaceae | Zea mays | 1 | Zm00001eb262950_P001 |