Basic Information
Locus ID:
Oco09G002470
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 2465057 | 2471099 | - | Oco09G002470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 64,485.23 Da | 47.61 | 96.30 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 77 | 123 | 8.1E-19 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 166 | 181 | 0.11 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 538 | 1.86E-30 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 50 | 9.42E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 587 | 7.2E-163 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 56 | 2.1E-6 | - |
| SMART | SM00367 | LRR_CC_2 | 379 | 403 | 0.28 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 115 | 139 | 610.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 140 | 165 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 488 | 512 | 200.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_006654054.2 | transport inhibitor response 1-like protein Os05g0150500 [Oryza brachyantha] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1EM17 | Transport inhibitor response 1-like protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_017249 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology