Basic Information
Locus ID:
Oco09G000830
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 786364 | 788830 | - | Oco09G000830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 38,204.19 Da | 27.23 | 87.99 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 5 | 176 | 8.37853E-57 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 202 | 356 | 3.53727E-78 | - |
| Pfam | PF00190 | Cupin | 200 | 342 | 4.2E-24 | IPR006045 |
| Pfam | PF00190 | Cupin | 9 | 158 | 1.4E-24 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 7 | 348 | 1.78E-50 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 9 | 181 | 1.1E-28 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 199 | 359 | 2.9E-51 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 4 | 161 | 1.2E-27 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 199 | 343 | 6.6E-18 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 215 | 235 | 4.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 298 | 316 | 4.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 280 | 295 | 4.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 262 | 278 | 4.3E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 320 | 337 | 4.3E-16 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_006653975.1 | 11S globulin seed storage protein 2-like [Oryza brachyantha] | 0 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1EH04 | 11S seed storage protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008405 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology