Basic Information
Locus ID:
Oco09G000500
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 479346 | 481150 | + | Oco09G000500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 41,920.30 Da | 76.47 | 58.72 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 202 | 243 | 3.22342E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 265 | 372 | 3.7E-42 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 201 | 243 | 4.1E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 23 | 56 | 5.4E-18 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 249 | 1.04E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 249 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 202 | 242 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 202 | 243 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 375 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006654903.2 | E3 ubiquitin-protein ligase RDUF2-like [Oryza brachyantha] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5W059 | RING-type E3 ubiquitin transferase OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0005g14570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology