Basic Information
Locus ID:
Oco08G018600
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 21713125 | 21718574 | + | Oco08G018600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 87,629.09 Da | 55.60 | 65.94 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 605 | 642 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 466 | 1.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 351 | 1.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 508 | 1.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 314 | 648 | 7.66E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 408 | 683 | 1.5E-48 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 275 | 370 | 8.6E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 313 | 352 | 2.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 508 | 3.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 466 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 643 | 0.0077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 601 | 71.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 549 | 0.98 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 475 | 509 | 10.390142 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 435 | 469 | 11.101955 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 320 | 361 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 435 | 475 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 320 | 357 | 11.65559 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 475 | 509 | 12.480124 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 339 | 353 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 495 | 509 | 8.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 339 | 353 | 8.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 453 | 467 | 8.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 697 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 52 | - | - |
| Coils | Coil | Coil | 263 | 286 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015636989.1 | WD repeat-containing protein 44 [Oryza sativa Japonica Group] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0H7I7 | WD_REPEATS_REGION domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology