Basic Information
Locus ID:
Oco08G018570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 21683473 | 21692900 | - | Oco08G018570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 102,299.08 Da | 45.98 | 78.64 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 265 | 1.07881E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 46 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 1.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 173 | 9.9E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 131 | 3.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 89 | 1.4E-4 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 776 | 932 | 1.1E-50 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 290 | 4.07E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 296 | 7.9E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 132 | 1.3E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 1.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 131 | 6.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 3.0E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 47 | 0.0035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 256 | 16.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 98 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 14 | 46 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 133 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 182 | 17.960709 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 91 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 14 | 56 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 218 | 12.235586 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 178 | 13.896486 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 224 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 140 | 15.086744 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 202 | 216 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 160 | 174 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 118 | 132 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 160 | 174 | 2.2E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 3 | 937 | 21.009544 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 422 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_052152034.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like [Oryza glaberrima] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | I1PQY0 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology