Basic Information
Locus ID:
Oco08G017450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 20715020 | 20716040 | + | Oco08G017450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 27,639.08 Da | 36.06 | 87.79 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 30 | 124 | 5.7E-15 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 150 | 243 | 2.2E-7 | IPR002902 |
| Gene3D | G3DSA:3.30.430.20 | - | 26 | 126 | 1.2E-17 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 137 | 247 | 3.2E-16 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 137 | 247 | 15.511224 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 23 | 127 | 16.371174 | IPR002902 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05200.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 25. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_015635326.1 | cysteine-rich receptor-like protein kinase 6 [Oryza sativa Japonica Group] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KW83 | Gnk2-homologous domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037812 |
| Poaceae | Oryza coarctata | 2 | Oco07G002850, Oco08G017450 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g25060.1, LOC_Os04g25650.1, LOC_Os04g56430.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703707 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG070520, gene_TRIDC6BG000330 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G580400.1, TraesCSU02G066500.1.cds1 |